APS Payroll vs. Paychex Flex

Overview
ProductRatingMost Used ByProduct SummaryStarting Price
APS Payroll
Score 6.9 out of 10
Mid-Size Companies (51-1,000 employees)
APS is a national workforce management and cloud-based HR solution provider. The platform includes core HR, payroll, time and attendance (including manager and employee self-service), compliance tools, and onboarding.N/A
Paychex Flex
Score 6.6 out of 10
N/A
Paychex Flex, of Paychex' Online Payroll Services, is a cloud-based human resource management and payroll platform. Paychex offers core and specialized services, and scales to meet the needs of small businesses, SMBs, and large enterprises.
$59
per month/+$4 per employee
Pricing
APS PayrollPaychex Flex
Editions & Modules
No answers on this topic
Paychex Go
$59
per month/+$4 per employee
Paychex Flex Service
Contact sales team
Paychex Flex Enterprise
Contact sales team
Offerings
Pricing Offerings
APS PayrollPaychex Flex
Free Trial
NoNo
Free/Freemium Version
NoNo
Premium Consulting/Integration Services
YesNo
Entry-level Setup FeeRequiredRequired
Additional DetailsOur Payroll solution is offered as a standalone service, but additional solutions must be used in conjunction with our Payroll solution. This ensures the best possible user experience for our customers.
More Pricing Information
Community Pulse
APS PayrollPaychex Flex
Considered Both Products
APS Payroll
Chose APS Payroll
APS is much easier to use; it's laid out better you have access to all of the employee data without having to switch screens.
Paychex Flex

No answer on this topic

Top Pros
Top Cons
Features
APS PayrollPaychex Flex
Human Resource Management
Comparison of Human Resource Management features of Product A and Product B
APS Payroll
7.3
32 Ratings
7% below category average
Paychex Flex
6.7
247 Ratings
16% below category average
Employee demographic data8.329 Ratings8.0197 Ratings
Employment history7.427 Ratings8.1220 Ratings
Job profiles and administration6.420 Ratings6.8155 Ratings
Workflow for transfers, promotions, pay raises, etc.8.326 Ratings7.3154 Ratings
Organizational charting4.013 Ratings1.01 Ratings
Organization and location management8.619 Ratings7.9138 Ratings
Compliance data (COBRA, OSHA, etc.)8.020 Ratings7.5132 Ratings
Payroll Management
Comparison of Payroll Management features of Product A and Product B
APS Payroll
8.8
32 Ratings
9% above category average
Paychex Flex
8.5
288 Ratings
6% above category average
Pay calculation9.231 Ratings9.0271 Ratings
Support for external payroll vendors8.013 Ratings00 Ratings
Off-cycle/On-Demand payment9.23 Ratings9.1136 Ratings
Benefit plan administration8.822 Ratings7.2156 Ratings
Direct deposit files8.931 Ratings9.2270 Ratings
Salary revision and increment management8.723 Ratings8.5193 Ratings
Reimbursement management8.913 Ratings7.9105 Ratings
Leave and Attendance Management
Comparison of Leave and Attendance Management features of Product A and Product B
APS Payroll
7.6
25 Ratings
6% below category average
Paychex Flex
7.0
144 Ratings
14% below category average
Approval workflow8.225 Ratings6.3102 Ratings
Balance details7.024 Ratings7.5136 Ratings
Annual carry-forward and encashment7.618 Ratings7.3110 Ratings
Employee Self Service
Comparison of Employee Self Service features of Product A and Product B
APS Payroll
7.7
33 Ratings
5% below category average
Paychex Flex
8.5
249 Ratings
5% above category average
View and generate pay and benefit information9.432 Ratings8.6228 Ratings
Update personal information9.230 Ratings9.0239 Ratings
View company policy documentation6.823 Ratings7.7111 Ratings
Employee recognition5.014 Ratings00 Ratings
View job history8.023 Ratings8.7168 Ratings
Asset Management
Comparison of Asset Management features of Product A and Product B
APS Payroll
5.8
12 Ratings
29% below category average
Paychex Flex
7.8
40 Ratings
1% above category average
Tracking of all physical assets5.812 Ratings7.840 Ratings
HR Reporting
Comparison of HR Reporting features of Product A and Product B
APS Payroll
7.2
32 Ratings
5% below category average
Paychex Flex
6.1
164 Ratings
22% below category average
Report builder7.932 Ratings5.8134 Ratings
Pre-built reports7.231 Ratings6.8154 Ratings
Ability to combine HR data with external data6.617 Ratings5.683 Ratings
Onboarding
Comparison of Onboarding features of Product A and Product B
APS Payroll
9.7
19 Ratings
19% above category average
Paychex Flex
8.0
158 Ratings
0% below category average
New hire portal9.519 Ratings8.0151 Ratings
Manager tracking tools9.815 Ratings7.9100 Ratings
Performance and Goals
Comparison of Performance and Goals features of Product A and Product B
APS Payroll
7.4
11 Ratings
10% below category average
Paychex Flex
-
Ratings
Corporate goal setting8.12 Ratings00 Ratings
Individual goal setting7.89 Ratings00 Ratings
Line-of sight-visibility5.18 Ratings00 Ratings
Performance tracking8.611 Ratings00 Ratings
Performance Management
Comparison of Performance Management features of Product A and Product B
APS Payroll
6.8
13 Ratings
15% below category average
Paychex Flex
-
Ratings
Performance plans7.612 Ratings00 Ratings
Performance improvement plans6.010 Ratings00 Ratings
Review status tracking7.611 Ratings00 Ratings
Review reminders7.212 Ratings00 Ratings
Multiple review frequency5.611 Ratings00 Ratings
Succession Planning
Comparison of Succession Planning features of Product A and Product B
APS Payroll
5.0
1 Ratings
45% below category average
Paychex Flex
-
Ratings
Create succession plans/pools5.01 Ratings00 Ratings
Candidate ranking5.01 Ratings00 Ratings
Recruiting / ATS
Comparison of Recruiting / ATS features of Product A and Product B
APS Payroll
8.1
8 Ratings
4% above category average
Paychex Flex
8.5
59 Ratings
9% above category average
Job Requisition Management9.56 Ratings9.732 Ratings
Company Website Posting9.57 Ratings9.730 Ratings
Publish to Social Media6.16 Ratings6.823 Ratings
Job Search Site Posting8.86 Ratings6.730 Ratings
Duplicate Candidate Prevention6.57 Ratings6.828 Ratings
Applicant Tracking9.16 Ratings9.633 Ratings
Notifications and Alerts6.98 Ratings9.853 Ratings
Best Alternatives
APS PayrollPaychex Flex
Small Businesses
Patriot Software
Patriot Software
Score 9.0 out of 10
Patriot Software
Patriot Software
Score 9.0 out of 10
Medium-sized Companies
Paypro Workforce Management
Paypro Workforce Management
Score 9.5 out of 10
Paypro Workforce Management
Paypro Workforce Management
Score 9.5 out of 10
Enterprises
Infor Human Resources
Infor Human Resources
Score 7.3 out of 10
Infor Human Resources
Infor Human Resources
Score 7.3 out of 10
All AlternativesView all alternativesView all alternatives
User Ratings
APS PayrollPaychex Flex
Likelihood to Recommend
8.5
(35 ratings)
7.7
(298 ratings)
Likelihood to Renew
9.7
(6 ratings)
8.9
(42 ratings)
Usability
9.5
(4 ratings)
8.0
(240 ratings)
Availability
9.0
(1 ratings)
9.3
(10 ratings)
Performance
9.0
(1 ratings)
9.1
(10 ratings)
Support Rating
6.8
(5 ratings)
7.7
(245 ratings)
In-Person Training
9.0
(1 ratings)
4.5
(1 ratings)
Online Training
9.0
(1 ratings)
7.0
(4 ratings)
Implementation Rating
8.7
(4 ratings)
9.4
(11 ratings)
Configurability
8.0
(1 ratings)
7.6
(8 ratings)
Ease of integration
8.0
(1 ratings)
9.1
(3 ratings)
Product Scalability
9.0
(1 ratings)
9.3
(10 ratings)
Vendor post-sale
9.0
(1 ratings)
8.9
(31 ratings)
Vendor pre-sale
9.0
(1 ratings)
9.2
(32 ratings)
User Testimonials
APS PayrollPaychex Flex
Likelihood to Recommend
APS Payroll
I think that APS Online is scalable to any organization. It's a wonderful product and I have had so many managers that work with me that feel the same way. We haven't been with them quite a year yet but since we've started it has made a world of difference for us. Things to ask about- 1- Do they specialize in or can they accommodate states that you are working in and their various rules? 2- What type of customer service? Do they have a call center or do they have a designated person like APS? 3- How long do your reports stay in the system? (ADP "archived" theirs after a year so we couldn't reach them)
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Paychex, Inc.
In my experience, Paychex Flex is well suited for small to medium sized businesses. It has been helpful in streamlining the onboarding process and it is easy to update and maintain employee profiles and records. It has worked will in a non-profit environment where there is clergy pay and housing, which can get quite complicated. I cannot think of a scenario where it would be less appropriate.
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Pros
APS Payroll
  • It's fast and intuitive. Our previous contractors were ADP and Paychex and neither were intuitive. Our payroll runs have less errors now than with previous vendors. Payroll prep time is down from 5 hours with ADP to 2 hours with APS for the HR Manager.
  • The limiters are great. I'm always afraid of that error that no one caught. Let's assume that you add a $200 limiter to overtime. Any time that a staff member is about to receive more than $200 in overtime for that pay period, a red flag goes up for the HR manager to double check.
  • We have 3 programs in public schools that block certain ports. APS has a 2nd feature using GPS so that staff can only check in for their shift while they are in the designated GPS range. Great for someone who has to report to a remote location. Just add the GPS coordinates and they can't check until they get to the project.
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Paychex, Inc.
  • I like I can enter payroll and if I need to leave the program, I can resume at a later time and my information is saved.
  • I like the analytics & reports features.
  • I like how all my employees have easy access to their portal.
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Cons
APS Payroll
  • Reporting - We have six different business units and the reporting is separate for all three. Most reporting I do requires information from all business units so am running six reports and then copying and pasting to get the report I need.
  • Multi-state taxes - We have a number of employees who live in New York and work in New Jersey. APS OnLine is designed to accommodate one state withholding so ability to have "worked in" state and "lived in" state taxes withheld went away. This was a shortfall.
  • The Carrier connection setup took much longer than expected. After a year, we are still having some issues with some items transferring over to the GL.
  • The CA overtime calculation does not calculate after 8 hours per day, only on the 40 per week so we override each week.
  • Reporting - when running Benefit reports, it recognizes employees who formerly carried the plan but may have dropped it. To get around this, we have to delete off the employee's record so the history is not readily available.
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Paychex, Inc.
  • Reporting writing is difficult to figure out
  • Employee turnover inside Paychex was a problem, until we were assigned to Neil Williams - since that time it has settled down
  • Pressure to convert personal connection with payroll advisor to using automated service
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Likelihood to Renew
APS Payroll
I have been using the system for over a year now and feel more comfortable with the functionality of it. I have just recently implemented the benefit administration portion.
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Paychex, Inc.
Overall I like the features that Paychex Flex offers. I am sure that there are other features that I am unaware of, so I am excited to see if there is more that Flex is capable of to make my job easier. The basic features are really user friendly and easy to access. If there ever is an issue customer service is great
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Usability
APS Payroll
In general, it's a great system to use. We were looking for simplicity and ease of use and have received raves from our employees in their ability to access and make use of the system. There is still so much more that we have yet to gain as we continue working through each of the modules.
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Paychex, Inc.
Some things could be streamlined. For example, we could do custom options for the "add items" tab which has so many options that we never use. "Medical Pay" could be something that the system remembers for the applicable employees. Salaried employees' salaries should definitely be auto-filled. Overall the system works well but I think it could be improved to be easier to use and read.
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Reliability and Availability
APS Payroll
I haven't had any outages
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Paychex, Inc.
We have not experienced any difficulties with unplanned outages. Notifications are always made for outages, and they do not effect normal business operations.
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Performance
APS Payroll
Very quick
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Paychex, Inc.
Unless there is lag time within the internet, the Paychex Flex website loads exceptional fast, pages load quickly and reports that I need to print or download load quickly. If I need to create a specialized report, once I complete it I receive an e-mail telling me my report is ready to be downloaded. Changing between web pages is fast as well.
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Support Rating
APS Payroll
I had to learn APS on my own, and the support team held my hand. They are still there when I have an occasional question. Anytime I need support, I can call my rep or send an email and help is on the way, without failure. The support team is awesome
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Paychex, Inc.
Our dedicated representative is one of the main reasons we are sticking with Paychex Flex. If it were not for this person, other platforms could provide the same/similar functionality. It is the ability to speak with someone that understands our business and is willing to get questions answered in a timely fashion that keeps us with Paychex Flex.
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In-Person Training
APS Payroll
Even if it wasn't in-person on location, we felt like we had our trainer in the room with us.
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Paychex, Inc.
We did online training only
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Online Training
APS Payroll
We had great webinars.
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Paychex, Inc.
It was easy to understand and follow along. I do like the informational videos that we can utilize before we opt to call in for customer service support. It has made a difference since sometimes that resolves the issue I may have had and saved myself a phone call to Paychex support.
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Implementation Rating
APS Payroll
It would have been helpful to understand the phases of the implementation up front so I could have prepared differently for enrollments, billing, and transfer of information to payroll. At the end of the day, I'm happy with the selection and the system and anticipate I will like it better as we go along. We have done a number of other system implementations in the past few years, and this has been pretty painless, however, I've had a few surprises.
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Paychex, Inc.
Implementation was very smooth. The most cumbersome task was entering the current employees into the system during initial set up, but Paychex staff handled most of that and verified against prior system reports as well as internal reports provided to ensure 100% accuracy.
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Alternatives Considered
APS Payroll
I have used ADP for many years and always found the system to be restrictive in ADP's resistance to building rules that matched the organization's needs rather than asking the organization to modify its policies to match 'canned' rules already built within ADP. Bamboo and several other newer systems really cannot support the many separate EINs under the corporate umbrella. And, finally, the other products are simply too costly for this organization.
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Paychex, Inc.
We still use QB Desktop Pro to maintain a Check Register / Overall Balance for the company, but once having tried QB Payroll Online for about 3 months prior to finding Paychex Flex I can tell you that there's just no comparison. QB online is VERY EXPENSIVE and not so user-friendly. I hated every minute of those 6 payrolls we ran through QB online.
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Scalability
APS Payroll
I've never had a problem with the system nor in finding the right information.
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Paychex, Inc.
Employees can log in at home and get up to date information on their FSA balance and any medical bill reimbursements they may have uploaded. At renewal time they have the ability to make changes to their FSA or for new employees star the enrollment.
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Return on Investment
APS Payroll
  • APS OnLine has helped us streamline the payroll process by freeing up our time of not having to personally cut and sign weekly paychecks. We don't have to rely on check signers to be present which has helped our timeliness as well.
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Paychex, Inc.
  • I do not believe we have saved anything additionally. The time we've had to spend to get things to hopefully work is sad. This is the reason we've had to turn off all extra "products" of Paychex Flex. Time and Attendance is horrible. Benefits management is horrible. The user experience is horrible.
  • One thing I do not understand is why are updates for states, cities, counties, school districts, etc. not automatically updated? Should we not get a big red flag if we have an employee living/working, being paid in CA, but they aren't set up for CA sick time? If it is required to be on the paycheck stub to show the balance of the sick time, why would we not be notified that we are out of compliance?
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ScreenShots

APS Payroll Screenshots

Screenshot of Benefits Administration Dashboard

Paychex Flex Screenshots

Screenshot of Screenshot of Screenshot of