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MasterControl Manufacturing Excellence vs. QuickBooks Desktop Enterprise

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    Overview
    ProductRatingMost Used ByProduct SummaryStarting Price

    MasterControl Manufacturing Excellence

    Score8.3 out of 10
    N/AMasterControl Manufacturing Excellence (Mx) is a digital manufacturing platform made to help life sciences manufacturers eliminate errors and deliver products to market taster. Mx enables paperless manufacturing with production records (EBR/eDHR) to MES features like electronic logbooks and asset management.N/A

    QuickBooks Desktop Enterprise

    Score7.8 out of 10
    N/AQuickBooks Desktop Enterprise is a widely-used accounting package designed for small to mid-sized businesses. It is the top of the QuickBooks line. Pricing starts at $3,000 for five users, and goes up depending on the number of additional users. They also offer an Advanced Inventory module for $999 / year.

    $1,703

    per year per user

    Pricing
    MasterControl Manufacturing ExcellenceQuickBooks Desktop Enterprise
    Editions & Modules
    No answers on this topic
    Diamond
    $447
    per month per user
    Diamond with Remote Access
    $513
    per month per user
    Gold
    2,210.00
    per year per user
    Platinum
    2,717.00
    per year per user
    Gold with Remote Access
    3,000.00
    per year per user
    Platinum with Remote Access
    3,504.00
    per year per user
    Offerings
    Pricing Offerings
    MasterControl Manufacturing ExcellenceQuickBooks Desktop Enterprise
    Free Trial
    NoNo
    Free/Freemium Version
    NoNo
    Premium Consulting/Integration Services
    YesNo
    Entry-level Setup FeeNo setup feeNo setup fee
    Additional Details——
    More Pricing Information
    Community Pulse
    MasterControl Manufacturing ExcellenceQuickBooks Desktop Enterprise
    Considered Both Products
    MasterControl
    No answer on this topic
    Intuit
    No answer on this topic
    Key User Insights
    Would buy again
    100%
    Would buy again
    38 Answers
    88%
    Would buy again
    100 Answers
    Delivers good value for the price
    100%
    Delivers good value for the price
    30 Answers
    90%
    Delivers good value for the price
    95 Answers
    Happy with the feature set
    100%
    Happy with the feature set
    38 Answers
    88%
    Happy with the feature set
    100 Answers
    Lived up to sales and marketing promises
    100%
    Lived up to sales and marketing promises
    25 Answers
    88%
    Lived up to sales and marketing promises
    69 Answers
    Implementation went as expected
    91%
    Implementation went as expected
    29 Answers
    94%
    Implementation went as expected
    80 Answers
    Features
    MasterControl Manufacturing ExcellenceQuickBooks Desktop Enterprise
    Payroll Management
    Comparison of Payroll Management features of MasterControl Manufacturing Excellence and QuickBooks Desktop Enterprise
    Feature
    MasterControl Manufacturing Excellence
    -
    Ratings
    QuickBooks Desktop Enterprise
    8.6
    128 Ratings
    13% above category average
    Pay calculation00 Ratings9.0121 Ratings
    Benefit plan administration00 Ratings7.873 Ratings
    Direct deposit files00 Ratings9.0104 Ratings
    Salary revision and increment management00 Ratings8.495 Ratings
    Reimbursement management00 Ratings8.696 Ratings
    Customization
    Comparison of Customization features of MasterControl Manufacturing Excellence and QuickBooks Desktop Enterprise
    Feature
    MasterControl Manufacturing Excellence
    -
    Ratings
    QuickBooks Desktop Enterprise
    7.1
    87 Ratings
    6% below category average
    API for custom integration00 Ratings8.269 Ratings
    Plug-ins00 Ratings6.078 Ratings
    Security
    Comparison of Security features of MasterControl Manufacturing Excellence and QuickBooks Desktop Enterprise
    Feature
    MasterControl Manufacturing Excellence
    -
    Ratings
    QuickBooks Desktop Enterprise
    8.7
    182 Ratings
    6% above category average
    Single sign-on capability00 Ratings9.0142 Ratings
    Role-based user permissions00 Ratings8.3180 Ratings
    Reporting & Analytics
    Comparison of Reporting & Analytics features of MasterControl Manufacturing Excellence and QuickBooks Desktop Enterprise
    Feature
    MasterControl Manufacturing Excellence
    -
    Ratings
    QuickBooks Desktop Enterprise
    8.0
    201 Ratings
    2% above category average
    Dashboards00 Ratings7.6171 Ratings
    Standard reports00 Ratings8.7199 Ratings
    Custom reports00 Ratings7.8191 Ratings
    General Ledger and Configurable Accounting
    Comparison of General Ledger and Configurable Accounting features of MasterControl Manufacturing Excellence and QuickBooks Desktop Enterprise
    Feature
    MasterControl Manufacturing Excellence
    -
    Ratings
    QuickBooks Desktop Enterprise
    7.8
    206 Ratings
    2% above category average
    Accounts payable00 Ratings8.7199 Ratings
    Accounts receivable00 Ratings8.1198 Ratings
    Cash management00 Ratings8.7181 Ratings
    Bank reconciliation00 Ratings9.3194 Ratings
    Expense management00 Ratings7.6182 Ratings
    Time tracking00 Ratings6.794 Ratings
    Fixed asset management00 Ratings7.3138 Ratings
    Multi-currency support00 Ratings6.566 Ratings
    Multi-division support00 Ratings7.7110 Ratings
    Regulations compliance00 Ratings7.580 Ratings
    Electronic tax filing00 Ratings7.2103 Ratings
    Self-service portal00 Ratings7.380 Ratings
    Global Financial Support00 Ratings5.738 Ratings
    Primary and Secondary Ledgers00 Ratings8.374 Ratings
    Intercompany Accounting00 Ratings8.296 Ratings
    Localizations00 Ratings8.055 Ratings
    Journals and Reconciliations00 Ratings9.0154 Ratings
    Enterprise Accounting00 Ratings8.3103 Ratings
    Configurable Accounting00 Ratings8.3102 Ratings
    Centralized Rules Framework00 Ratings8.063 Ratings
    Standardized Processes00 Ratings8.2114 Ratings
    Inventory Management
    Comparison of Inventory Management features of MasterControl Manufacturing Excellence and QuickBooks Desktop Enterprise
    Feature
    MasterControl Manufacturing Excellence
    -
    Ratings
    QuickBooks Desktop Enterprise
    7.3
    120 Ratings
    0% above category average
    Inventory tracking00 Ratings8.1116 Ratings
    Automatic reordering00 Ratings7.961 Ratings
    Location management00 Ratings6.876 Ratings
    Manufacturing module00 Ratings6.660 Ratings
    Order Management
    Comparison of Order Management features of MasterControl Manufacturing Excellence and QuickBooks Desktop Enterprise
    Feature
    MasterControl Manufacturing Excellence
    -
    Ratings
    QuickBooks Desktop Enterprise
    7.6
    150 Ratings
    3% above category average
    Pricing00 Ratings7.2111 Ratings
    Order entry00 Ratings7.5116 Ratings
    Credit card processing00 Ratings7.1106 Ratings
    Cost of goods sold00 Ratings8.0133 Ratings
    Order Orchestration00 Ratings7.366 Ratings
    End-to-end order visibility00 Ratings8.164 Ratings
    Order exception Resolution00 Ratings8.150 Ratings
    Best Alternatives
    MasterControl Manufacturing ExcellenceQuickBooks Desktop Enterprise
    Small Businesses
    No answers on this topic
    QuickBooks Self-Employed (discontinued)
    Score4.2 out of 10
    Medium-sized Companies
    No answers on this topic
    MYOB
    Score8.3 out of 10
    Enterprises
    No answers on this topic
    Microsoft Dynamics GP
    Score5.4 out of 10
    All AlternativesView all alternativesView all alternatives
    User Ratings
    MasterControl Manufacturing ExcellenceQuickBooks Desktop Enterprise
    Likelihood to Recommend
    8.3
    (38 ratings)
    8.1
    (217 ratings)
    Likelihood to Renew
    9.1
    (1 ratings)
    8.6
    (27 ratings)
    Usability
    7.8
    (38 ratings)
    9.4
    (14 ratings)
    Availability
    -
    (0 ratings)
    10.0
    (4 ratings)
    Performance
    -
    (0 ratings)
    10.0
    (3 ratings)
    Support Rating
    9.1
    (1 ratings)
    6.0
    (5 ratings)
    In-Person Training
    -
    (0 ratings)
    7.0
    (1 ratings)
    Online Training
    -
    (0 ratings)
    9.1
    (3 ratings)
    Implementation Rating
    -
    (0 ratings)
    7.5
    (11 ratings)
    Configurability
    -
    (0 ratings)
    5.0
    (4 ratings)
    CPA Rating
    -
    (0 ratings)
    7.2
    (9 ratings)
    Ease of integration
    -
    (0 ratings)
    9.1
    (2 ratings)
    Product Scalability
    -
    (0 ratings)
    10.0
    (3 ratings)
    Vendor post-sale
    -
    (0 ratings)
    1.0
    (4 ratings)
    Vendor pre-sale
    -
    (0 ratings)
    10.0
    (3 ratings)
    User Testimonials
    MasterControl Manufacturing ExcellenceQuickBooks Desktop Enterprise
    Likelihood to Recommend
    MasterControl
    MasterControl Manufacturing Excellence is excellent for creating batch records to track a specific regulated process. It helps us keep our data in line and make sure we are following our procedures. there are some difficulties with more customizable products. The more variable that are in the product the fewer features that MasterControl Manufacturing Excellence can apply to assist
    Incentivized
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    Intuit
    QuickBooks Enterprise is great for managing our inventory, purchases and income as we receive it. We use it to help budget and plan our monthly purchases, as well as keep each location on track when it comes to their expenses. It's also used for payroll and timekeeping at each store.
    Incentivized
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    Pros
    MasterControl
    • Coding is not needed to build production records
    • All data input types are highly configurable from getting data collected from integrated systems all the way to simple text entries.
    • Customer service is outstanding to keep our cases resolved in a timely manner.
    • The updates continue to improve end user experiences and better functionality
    Read full review
    Intuit
    • Generally, a mouse is not needed!
    • Updating as each transaction is posted means, in the event of a crash, power failure, whatever; all the posted transactions are securely in the data file and can be pulled up on another computer, if the computer being used crashes.
    • Reporting is generally user friendly, in that one can see the desired results by setting a few parameters for the report.
    Incentivized
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    Cons
    MasterControl
    • Collaboration within a document on MasterControl Manufacturing Excellence could be improved
    • I would like to be able to put more than 1 prerequisite on a training task in MasterControl Manufacturing Excellence
    • It would be nice if training aids from MasterControl Manufacturing Excellence were accessible within the application and not just their site.
    Incentivized
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    Intuit
    • Wish we had the ability to track gallons. We are a truck stop and need to know how many gallons we buy and sell.
    • Matching up credits in Pay Bills can be challenging, especially if you make a mistake.
    • Wish in some of the reporting that it would automatically total some columns.
    • Downloading from the bank wish it would tell you the last time you downloaded and the dates you put in so you don't download the same information twice.
    Incentivized
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    Likelihood to Renew
    MasterControl
    The quality service and the strong production versatility has helped us develop a great solution for our batch records. These improvements are much better than the legacy batch records and provide immediate access at multiple points across the organization. Would definitely purchase again.
    Read full review
    Intuit
    While QuickBooks Desktop Enterprise has been an amazing tool for many years, it seems it is getting phased out for QuickBooks Online. Intuit is decreasing the level of support it offers for QuickBooks Desktop in lieu of stronger support for QuickBooks Online. Although the desktop version is robust and helpful, it seems QBO is the way of the future for bookkeeping with QuickBooks.
    Incentivized
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    Usability
    MasterControl
    I receive positive feedback from manufacturing personnel about how easy it is to use when manufacturing and I also receive positive feedback from quality personnel for review batch records. We have had some deviations where operators are inputting data under other operators accounts which is really bad good documentation practices and is a compliance risk
    Read full review
    Intuit
    QuickBooks provides all staff immediate access to the data in whatever form each person wants it. The balancing on entries prevents incorrect data entry on payables/receivables. Reports are easy to customize and save for future use. The records are easy to audit.
    Incentivized
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    Reliability and Availability
    MasterControl
    No answers on this topic
    Intuit
    Rating: 7 out of 10
    We rate QuickBooks Desktop Enterprise's availability a 7 out of 10. For the most part, the software is dependable and available when we need it. When hosted on a properly managed local server or through a reputable third-party cloud provider, uptime is generally consistent, and routine day-to-day operations run smoothly.
    However, availability challenges do arise, particularly when accessing QuickBooks remotely or during periods of high system demand. Because it's a desktop-based solution, availability is highly dependent on our internal IT infrastructure. If our network goes down, a server needs maintenance, or if there’s an issue with a remote desktop connection, access to QuickBooks can be temporarily disrupted. These outages aren’t necessarily caused by QuickBooks itself, but they do impact our experience with availability.
    Additionally, we’ve occasionally experienced application errors, especially after updates or when working with large company files. While Intuit support is usually helpful in resolving these issues, they can still lead to frustrating delays—especially during critical periods like month-end closing or grant reporting deadlines.
    Planned maintenance, while infrequent, also affects availability, especially when using a hosted environment. Coordination with IT or hosting providers is sometimes needed to minimize downtime.
    Overall, QuickBooks Desktop Enterprise is a reliable tool, but its dependence on local infrastructure introduces more potential points of failure compared to cloud-native solutions. Enhancements in cloud-based access or hybrid models could significantly improve both accessibility and uptime. That said, with strong internal IT support or a reliable cloud hosting provider, the availability can easily rise to an 8 or 9.
    Incentivized
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    Performance
    MasterControl
    No answers on this topic
    Intuit
    I rate QuickBooks Desktop Enterprise's performance a 5 out of 10, mainly because while it’s functional for most routine tasks, it can lag significantly when handling complex operations, large data files, or during multi-user sessions. As our organization has grown, we’ve noticed that report generation—especially for customized or multi-dimensional reports—can be slow, sometimes taking several minutes to load or refresh. This impacts productivity, particularly during key financial cycles like audits, monthly closings, or grant reporting.
    Performance degradation is especially noticeable when multiple users are active in the system at the same time. Even with a solid server setup, there’s often a drop in responsiveness when more than a handful of users are generating reports or entering transactions concurrently.
    We’ve also experienced some slowdowns in third-party integrations, particularly when syncing with Vena Solutions or exporting data for use in external tools. While the integrations are valuable, they occasionally stall or require workarounds, adding friction to our workflows.
    In short, QuickBooks Desktop Enterprise delivers the basics well, but its performance limitations become more apparent in high-volume or complex use cases. It would benefit from better optimization for large datasets and faster processing for advanced reporting. Upgrades in system architecture—such as deeper support for cloud hosting or more efficient data handling—could significantly improve the user experience and move this rating closer to an 8.
    Incentivized
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    Support Rating
    MasterControl
    During a few early templates, a configuration for product family had not been removed and it created an error. The subject matter expert and support desk was able to help me understand the error was builder generated and how to resolve it very quickly. This is now a non-existent occurrence.
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    Intuit
    It takes a long time to get through to customer support. And sometimes you have to explain the situation multiple times before the rep actually understands the issue, but that's usually because the issue is complex and out of the ordinary. However, the rep is always patient, and will take as much time and effort as necessary to resolve whatever issue you're having. It's nice that they can "take over" your computer rather than having to talk you through the solution over the phone.
    Incentivized
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    In-Person Training
    MasterControl
    No answers on this topic
    Intuit
    It is a very easy system to learn, so with the help it was even easier. QB is a good solid system, but it lacks some of the complexity other systems have. with QB you need to get additional modules to get the same functionality that other systems offer standard
    Incentivized
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    Online Training
    MasterControl
    No answers on this topic
    Intuit
    easy to learn system, specially with some kind of support. Just like with any other system, things get lot easier if you have guidance to lead you in your search for answers. having said that, QB is very easy to use and very easy to teach. you wont spend much time memorizing where to click.
    Incentivized
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    Implementation Rating
    MasterControl
    No answers on this topic
    Intuit
    If you're loading QuickBooks Enterprise Solutions onto a computer that you're going to directly log into, you should be able to do it yourself. If you are going to connect to a server through a network or remote connection, you should probably have a professional IT person set it up for you.
    Incentivized
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    Alternatives Considered
    MasterControl
    We choose Mx to try and get rid of the paper trail, assist with the improvement for GDP, ease of access and review of the production records to try and get better on releasing batches to meet demand. Having our documents, training and production records in one general area makes it easier for end user
    Read full review
    Intuit
    We have selected this product as it is affordoable in terms of pricing and features too. Our clients is geeting lots of benefits by using this product. By using QuickBooks desktop client also manage the information realted to financials and also get the clear picture for the future by using the accounting information from this product.
    Incentivized
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    Scalability
    MasterControl
    No answers on this topic
    Intuit
    I would rate QuickBooks Desktop Enterprise a 7 out of 10 for overall scalability. The product offers solid scalability features, particularly for small to mid-sized organizations like ours that are growing and need reliable multi-user access, enhanced data capacity, and cross-departmental functionality. It handles increasing transaction volumes and user growth quite well, especially with its support for up to 40 users and the ability to manage large lists (customers, vendors, accounts, etc.)—a significant improvement over QuickBooks Pro or Premier.
    Its role-based permissions system also allows us to assign tailored access by department or user level, which is essential for maintaining control and security across teams like finance, HR, and program management. Additionally, features like advanced reporting, inventory management, and class tracking have helped us better manage multiple programs or sites within one system.
    That said, the scalability still has some limits. For example, deploying the software across multiple physical locations or for remote teams requires additional IT infrastructure—such as hosting it on a third-party cloud server or setting up a VPN—which introduces cost and complexity. Also, while QuickBooks Desktop Enterprise can technically handle a high volume of data, performance can decline as the file size grows over time unless regular maintenance and optimization are done.
    In summary, QuickBooks Desktop Enterprise scales well within its designed range, particularly for growing nonprofits and NGOs. However, organizations with distributed teams or very large, complex operations may eventually find the system’s desktop-based architecture less agile compared to cloud-native ERP platforms. With enhancements to cloud integration and remote accessibility, this rating could easily increase.
    Incentivized
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    Return on Investment
    MasterControl
    • We have been able to reduce the amount of production records variability had based on product families.
    • New user uptake is very high and they can learn the solution quickly.
    • The ability to add formula parameters and production record linking has helped traceability.
    Read full review
    Intuit
    • Good value for the price. The initial setup was quick and easy.
    • When properly set up and processes are followed it's decent at managing inventory which is something we had problems with. Have to have a dedicated employee to builds.
    • Rolling up costs in multi-level BOM's is a project each time we have to review costs, it's very time consuming to manually update all assemblies.
    Incentivized
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