QuickBooks Desktop Enterprise vs. Zoho Books

Overview
ProductRatingMost Used ByProduct SummaryStarting Price
QuickBooks Desktop Enterprise
Score 8.0 out of 10
N/A
QuickBooks Desktop Enterprise is a widely-used accounting package designed for small to mid-sized businesses. It is the top of the QuickBooks line. Pricing starts at $3,000 for five users, and goes up depending on the number of additional users. They also offer an Advanced Inventory module for $999 / year.
$1,703
per year per user
Zoho Books
Score 9.1 out of 10
N/A
Zoho Books is an accounting solution that is designed to help small businesses manage their finances. This solution includes dashboards and a wide variety of reports. Business users can automate tasks and set up custom workflows. Zoho offers a 14 day free trial.
$20
per month
Pricing
QuickBooks Desktop EnterpriseZoho Books
Editions & Modules
Diamond
$447
per month per user
Diamond with Remote Access
$513
per month per user
Gold
2,210.00
per year per user
Platinum
2,717.00
per year per user
Gold with Remote Access
3,000.00
per year per user
Platinum with Remote Access
3,504.00
per year per user
Free
$0
For businesses with turnover <50K USD per annum
Standard
$20
per month per org
Professional
$50
per month per org
Premium
$70
per month per org
Offerings
Pricing Offerings
QuickBooks Desktop EnterpriseZoho Books
Free Trial
NoYes
Free/Freemium Version
NoYes
Premium Consulting/Integration Services
NoNo
Entry-level Setup FeeNo setup feeNo setup fee
Additional DetailsZoho Books is available for both monthly and yearly plans. Users who sign up for the annual plan get a discount.
More Pricing Information
Community Pulse
QuickBooks Desktop EnterpriseZoho Books
Considered Both Products
QuickBooks Desktop Enterprise
Chose QuickBooks Desktop Enterprise
This is a long list, and every program has it's pros and cons. Ultimately we chose Quickbooks because of simplicity, 3rd party integrations, and cost.
Chose QuickBooks Desktop Enterprise
Ultimately, the decision really came down to the advisor that we chose to use. Pricing was also a big factor and the ability to tie into other applications/programs.
Zoho Books
Chose Zoho Books
Affordability better, online access better, automations better, integration with our CRM and inventory better, customizability better
Chose Zoho Books
Much simpler than QuickBooks Desktop. For our needs, the pricing for Zoho Books when bought through a Zoho One subscription was a much better value. Our outside Audit firm was also able to follow Zoho Books much easier than our previous records.
Features
QuickBooks Desktop EnterpriseZoho Books
Payroll Management
Comparison of Payroll Management features of Product A and Product B
QuickBooks Desktop Enterprise
8.5
125 Ratings
12% above category average
Zoho Books
-
Ratings
Pay calculation9.2118 Ratings00 Ratings
Benefit plan administration7.971 Ratings00 Ratings
Direct deposit files8.9102 Ratings00 Ratings
Salary revision and increment management8.193 Ratings00 Ratings
Reimbursement management8.294 Ratings00 Ratings
Customization
Comparison of Customization features of Product A and Product B
QuickBooks Desktop Enterprise
7.4
85 Ratings
4% below category average
Zoho Books
8.1
18 Ratings
5% above category average
API for custom integration7.768 Ratings8.118 Ratings
Plug-ins7.177 Ratings00 Ratings
Security
Comparison of Security features of Product A and Product B
QuickBooks Desktop Enterprise
8.7
178 Ratings
6% above category average
Zoho Books
8.7
28 Ratings
6% above category average
Single sign-on capability9.1139 Ratings8.622 Ratings
Role-based user permissions8.4176 Ratings8.926 Ratings
Reporting & Analytics
Comparison of Reporting & Analytics features of Product A and Product B
QuickBooks Desktop Enterprise
8.3
197 Ratings
6% above category average
Zoho Books
8.9
27 Ratings
13% above category average
Dashboards8.2167 Ratings8.627 Ratings
Standard reports8.9195 Ratings9.025 Ratings
Custom reports7.7187 Ratings9.01 Ratings
General Ledger and Configurable Accounting
Comparison of General Ledger and Configurable Accounting features of Product A and Product B
QuickBooks Desktop Enterprise
7.9
201 Ratings
4% above category average
Zoho Books
8.1
28 Ratings
6% above category average
Accounts payable8.7194 Ratings8.326 Ratings
Accounts receivable8.4194 Ratings9.027 Ratings
Cash management8.9177 Ratings7.525 Ratings
Bank reconciliation9.4190 Ratings7.425 Ratings
Expense management8.1178 Ratings8.026 Ratings
Time tracking6.692 Ratings8.218 Ratings
Fixed asset management7.2135 Ratings00 Ratings
Multi-currency support6.865 Ratings8.417 Ratings
Multi-division support7.4107 Ratings00 Ratings
Regulations compliance7.477 Ratings7.815 Ratings
Electronic tax filing7.3100 Ratings00 Ratings
Self-service portal7.079 Ratings8.519 Ratings
Global Financial Support6.138 Ratings00 Ratings
Primary and Secondary Ledgers8.472 Ratings00 Ratings
Intercompany Accounting7.795 Ratings00 Ratings
Localizations8.354 Ratings00 Ratings
Journals and Reconciliations9.3150 Ratings00 Ratings
Enterprise Accounting8.6100 Ratings00 Ratings
Configurable Accounting8.598 Ratings00 Ratings
Centralized Rules Framework8.461 Ratings00 Ratings
Standardized Processes8.4111 Ratings00 Ratings
Inventory Management
Comparison of Inventory Management features of Product A and Product B
QuickBooks Desktop Enterprise
7.6
118 Ratings
1% above category average
Zoho Books
7.7
16 Ratings
2% above category average
Inventory tracking8.1114 Ratings8.416 Ratings
Automatic reordering7.760 Ratings7.110 Ratings
Location management7.675 Ratings00 Ratings
Manufacturing module7.259 Ratings00 Ratings
Order Management
Comparison of Order Management features of Product A and Product B
QuickBooks Desktop Enterprise
8.1
147 Ratings
6% above category average
Zoho Books
8.7
25 Ratings
13% above category average
Pricing8.3109 Ratings8.421 Ratings
Order entry8.4114 Ratings9.320 Ratings
Credit card processing7.7103 Ratings8.120 Ratings
Cost of goods sold8.7131 Ratings9.120 Ratings
Order Orchestration7.864 Ratings00 Ratings
End-to-end order visibility8.163 Ratings00 Ratings
Order exception Resolution8.149 Ratings00 Ratings
Best Alternatives
QuickBooks Desktop EnterpriseZoho Books
Small Businesses
QuickBooks Self-Employed (discontinued)
QuickBooks Self-Employed (discontinued)
Score 7.2 out of 10
QuickBooks Self-Employed (discontinued)
QuickBooks Self-Employed (discontinued)
Score 7.2 out of 10
Medium-sized Companies
Zoho Books
Zoho Books
Score 9.1 out of 10
Accounting Seed
Accounting Seed
Score 7.6 out of 10
Enterprises
SAP S/4HANA Cloud
SAP S/4HANA Cloud
Score 8.5 out of 10
SAP S/4HANA Cloud
SAP S/4HANA Cloud
Score 8.5 out of 10
All AlternativesView all alternativesView all alternatives
User Ratings
QuickBooks Desktop EnterpriseZoho Books
Likelihood to Recommend
8.4
(208 ratings)
8.8
(29 ratings)
Likelihood to Renew
8.5
(26 ratings)
-
(0 ratings)
Usability
9.9
(13 ratings)
8.9
(11 ratings)
Availability
10.0
(4 ratings)
-
(0 ratings)
Performance
10.0
(3 ratings)
-
(0 ratings)
Support Rating
6.0
(5 ratings)
5.3
(5 ratings)
In-Person Training
7.0
(1 ratings)
-
(0 ratings)
Online Training
9.1
(3 ratings)
-
(0 ratings)
Implementation Rating
9.5
(10 ratings)
-
(0 ratings)
Configurability
5.2
(4 ratings)
-
(0 ratings)
Ease of integration
9.1
(2 ratings)
-
(0 ratings)
Product Scalability
10.0
(3 ratings)
-
(0 ratings)
Vendor post-sale
1.3
(4 ratings)
-
(0 ratings)
Vendor pre-sale
10.0
(3 ratings)
-
(0 ratings)
User Testimonials
QuickBooks Desktop EnterpriseZoho Books
Likelihood to Recommend
Intuit
QuickBooks Enterprise is great for managing our inventory, purchases and income as we receive it. We use it to help budget and plan our monthly purchases, as well as keep each location on track when it comes to their expenses. It's also used for payroll and timekeeping at each store.
Read full review
Zoho
If using other cloud applications and you wish to create Zoho Books transactions via APIs, Zoho Books is great. The overall UI and flow of the application are great. If you need a detailed job cost accounting solution and robust reporting there is some room for improvement here.
Read full review
Pros
Intuit
  • Generally, a mouse is not needed!
  • Updating as each transaction is posted means, in the event of a crash, power failure, whatever; all the posted transactions are securely in the data file and can be pulled up on another computer, if the computer being used crashes.
  • Reporting is generally user friendly, in that one can see the desired results by setting a few parameters for the report.
Read full review
Zoho
  • Zoho Books invoicing and receipting features are second to none. We find it easy to quickly invoice clients and add items to their bills and also for our own receipting internally.
  • The accounting features are great for our accounting team to be able to see where we are financially and how the business is doing.
  • The ability to add contacts and run a mini CRM channel with clients within Zoho is invaluable. Since we use this in conjunction with our other CRM channels, it helps to have a centralized place to follow up and see through a sales funnel.
  • Zoho Books allows us to take payments from clients around the globe a feature we didn't have when we used another accounting system.
  • The pricing for Zoho Books is fairly reasonable for an SME organization which is a great for us as it pays itself back many times over every month.
Read full review
Cons
Intuit
  • Wish we had the ability to track gallons. We are a truck stop and need to know how many gallons we buy and sell.
  • Matching up credits in Pay Bills can be challenging, especially if you make a mistake.
  • Wish in some of the reporting that it would automatically total some columns.
  • Downloading from the bank wish it would tell you the last time you downloaded and the dates you put in so you don't download the same information twice.
Read full review
Zoho
  • Zoho Books is only available in Texas and California. There is no integration allowed for paying employee expenses. The absolute worst aspect is the fact that if you make even the slightest error in data input there is no backing up. You cannot undo an error.
  • The system does not allow change once implemented, so you must get every one of your beginning balances perfect. The practice of Journal Entries is cumbersome. When reconciling, Zoho Books has adopted a number of required steps that significantly overcomplicate reconciliation using practices that are not consistent with general accounting principles in the US.
  • On the customer side, you must look in two places to see the beginning balance and the current receivables that might exist for current invoicing.
  • The way the system works, you must avoid having much trust with the balances depicted. So far, it appears that Zoho Books uses what we called in school "that new math."
  • It would be terrifying to rely on this bookkeeping system to support an IRS Audit. The system violates too many fundamental accounting principles.
  • The software is used by so few people that there is concern that we might never find a skilled bookkeeper.
Read full review
Likelihood to Renew
Intuit
While QuickBooks Desktop Enterprise has been an amazing tool for many years, it seems it is getting phased out for QuickBooks Online. Intuit is decreasing the level of support it offers for QuickBooks Desktop in lieu of stronger support for QuickBooks Online. Although the desktop version is robust and helpful, it seems QBO is the way of the future for bookkeeping with QuickBooks.
Read full review
Zoho
No answers on this topic
Usability
Intuit
QuickBooks provides all staff immediate access to the data in whatever form each person wants it. The balancing on entries prevents incorrect data entry on payables/receivables. Reports are easy to customize and save for future use. The records are easy to audit.
Read full review
Zoho
Customization is the biggest struggle for us and most of the time we need to involve a tech person. The chat support is a great feature and very helpful. It would be great to be able to customize and create invoices and correspondence (templates) such are reminders in multiple languages within one organization. The currency (USD) would be the same. We have clients in different countries that don't speak English but pay in USD.
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Reliability and Availability
Intuit
Rating: 7 out of 10
We rate QuickBooks Desktop Enterprise's availability a 7 out of 10. For the most part, the software is dependable and available when we need it. When hosted on a properly managed local server or through a reputable third-party cloud provider, uptime is generally consistent, and routine day-to-day operations run smoothly.
However, availability challenges do arise, particularly when accessing QuickBooks remotely or during periods of high system demand. Because it's a desktop-based solution, availability is highly dependent on our internal IT infrastructure. If our network goes down, a server needs maintenance, or if there’s an issue with a remote desktop connection, access to QuickBooks can be temporarily disrupted. These outages aren’t necessarily caused by QuickBooks itself, but they do impact our experience with availability.
Additionally, we’ve occasionally experienced application errors, especially after updates or when working with large company files. While Intuit support is usually helpful in resolving these issues, they can still lead to frustrating delays—especially during critical periods like month-end closing or grant reporting deadlines.
Planned maintenance, while infrequent, also affects availability, especially when using a hosted environment. Coordination with IT or hosting providers is sometimes needed to minimize downtime.
Overall, QuickBooks Desktop Enterprise is a reliable tool, but its dependence on local infrastructure introduces more potential points of failure compared to cloud-native solutions. Enhancements in cloud-based access or hybrid models could significantly improve both accessibility and uptime. That said, with strong internal IT support or a reliable cloud hosting provider, the availability can easily rise to an 8 or 9.
Read full review
Zoho
No answers on this topic
Performance
Intuit
I rate QuickBooks Desktop Enterprise's performance a 5 out of 10, mainly because while it’s functional for most routine tasks, it can lag significantly when handling complex operations, large data files, or during multi-user sessions. As our organization has grown, we’ve noticed that report generation—especially for customized or multi-dimensional reports—can be slow, sometimes taking several minutes to load or refresh. This impacts productivity, particularly during key financial cycles like audits, monthly closings, or grant reporting.
Performance degradation is especially noticeable when multiple users are active in the system at the same time. Even with a solid server setup, there’s often a drop in responsiveness when more than a handful of users are generating reports or entering transactions concurrently.
We’ve also experienced some slowdowns in third-party integrations, particularly when syncing with Vena Solutions or exporting data for use in external tools. While the integrations are valuable, they occasionally stall or require workarounds, adding friction to our workflows.
In short, QuickBooks Desktop Enterprise delivers the basics well, but its performance limitations become more apparent in high-volume or complex use cases. It would benefit from better optimization for large datasets and faster processing for advanced reporting. Upgrades in system architecture—such as deeper support for cloud hosting or more efficient data handling—could significantly improve the user experience and move this rating closer to an 8.
Read full review
Zoho
No answers on this topic
Support Rating
Intuit
It takes a long time to get through to customer support. And sometimes you have to explain the situation multiple times before the rep actually understands the issue, but that's usually because the issue is complex and out of the ordinary. However, the rep is always patient, and will take as much time and effort as necessary to resolve whatever issue you're having. It's nice that they can "take over" your computer rather than having to talk you through the solution over the phone.
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Zoho
The support team feels very disjointed. We have filtered through a number of "lead" contacts and are frequently spammed by other Zoho members. Once getting an appropriate support contact on the phone - the team is very helpful, it just takes a lot of hoop jumping to get there. We actually unsubscribed from their support package as we were not getting the value we were looking for.
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In-Person Training
Intuit
It is a very easy system to learn, so with the help it was even easier. QB is a good solid system, but it lacks some of the complexity other systems have. with QB you need to get additional modules to get the same functionality that other systems offer standard
Read full review
Zoho
No answers on this topic
Online Training
Intuit
easy to learn system, specially with some kind of support. Just like with any other system, things get lot easier if you have guidance to lead you in your search for answers. having said that, QB is very easy to use and very easy to teach. you wont spend much time memorizing where to click.
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Zoho
No answers on this topic
Implementation Rating
Intuit
If you're loading QuickBooks Enterprise Solutions onto a computer that you're going to directly log into, you should be able to do it yourself. If you are going to connect to a server through a network or remote connection, you should probably have a professional IT person set it up for you.
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Zoho
No answers on this topic
Alternatives Considered
Intuit
We have selected this product as it is affordoable in terms of pricing and features too. Our clients is geeting lots of benefits by using this product. By using QuickBooks desktop client also manage the information realted to financials and also get the clear picture for the future by using the accounting information from this product.
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Zoho
We had a lot of problems with Exact Online, support-wise and price-wise. So Zoho Books wins on every point there. While Exact offers way more options, it tends to be really slow... and complex. Again Zoho Books wins. If you want an easy-to-use tool and not pay a lot of money, or if you are a small administration office with a few clients, this tool will be perfect for you.
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Scalability
Intuit
I would rate QuickBooks Desktop Enterprise a 7 out of 10 for overall scalability. The product offers solid scalability features, particularly for small to mid-sized organizations like ours that are growing and need reliable multi-user access, enhanced data capacity, and cross-departmental functionality. It handles increasing transaction volumes and user growth quite well, especially with its support for up to 40 users and the ability to manage large lists (customers, vendors, accounts, etc.)—a significant improvement over QuickBooks Pro or Premier.
Its role-based permissions system also allows us to assign tailored access by department or user level, which is essential for maintaining control and security across teams like finance, HR, and program management. Additionally, features like advanced reporting, inventory management, and class tracking have helped us better manage multiple programs or sites within one system.
That said, the scalability still has some limits. For example, deploying the software across multiple physical locations or for remote teams requires additional IT infrastructure—such as hosting it on a third-party cloud server or setting up a VPN—which introduces cost and complexity. Also, while QuickBooks Desktop Enterprise can technically handle a high volume of data, performance can decline as the file size grows over time unless regular maintenance and optimization are done.
In summary, QuickBooks Desktop Enterprise scales well within its designed range, particularly for growing nonprofits and NGOs. However, organizations with distributed teams or very large, complex operations may eventually find the system’s desktop-based architecture less agile compared to cloud-native ERP platforms. With enhancements to cloud integration and remote accessibility, this rating could easily increase.
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Zoho
No answers on this topic
Return on Investment
Intuit
  • Good value for the price. The initial setup was quick and easy.
  • When properly set up and processes are followed it's decent at managing inventory which is something we had problems with. Have to have a dedicated employee to builds.
  • Rolling up costs in multi-level BOM's is a project each time we have to review costs, it's very time consuming to manually update all assemblies.
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Zoho
  • Integration: Zoho Books offers out of the box integrations to extend the functionality and connect with the applications you love like MailChimp, Microsoft Outlook, PandaDoc, and Quickbooks, etc.
  • Flexibility makes Zoho Books great!
  • Since I can use forecast reports, I can create customizable sales forecast data from the dashboard to accurately measure revenue forecasts and establish sales quotas.
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ScreenShots

Zoho Books Screenshots

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