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    Overview
    ProductRatingMost Used ByProduct SummaryStarting Price

    QuickBooks Desktop Enterprise

    Score7.8 out of 10
    N/AQuickBooks Desktop Enterprise is a widely-used accounting package designed for small to mid-sized businesses. It is the top of the QuickBooks line. Pricing starts at $3,000 for five users, and goes up depending on the number of additional users. They also offer an Advanced Inventory module for $999 / year.

    $1,703

    per year per user

    Shopify

    Score8.7 out of 10
    N/AShopify is a commerce platform designed for both online stores and retail locations. Shopify offers a professional online storefront, a payment solution to accept credit cards, and the Shopify POS application to power retail sales.

    $39

    per month

    Pricing
    QuickBooks Desktop EnterpriseShopify
    Editions & Modules
    Diamond
    $447
    per month per user
    Diamond with Remote Access
    $513
    per month per user
    Gold
    2,210.00
    per year per user
    Platinum
    2,717.00
    per year per user
    Gold with Remote Access
    3,000.00
    per year per user
    Platinum with Remote Access
    3,504.00
    per year per user
    Basic Shopify
    $39
    per month
    Grow
    $105
    per month
    Advanced
    $399
    per month
    Shopify Plus
    2,000
    per month
    Shopify Plus
    2,300
    per month
    Offerings
    Pricing Offerings
    QuickBooks Desktop EnterpriseShopify
    Free Trial
    NoYes
    Free/Freemium Version
    NoNo
    Premium Consulting/Integration Services
    NoNo
    Entry-level Setup FeeNo setup feeNo setup fee
    Additional DetailsA 25% discount is offered for annual billing.
    More Pricing Information
    Community Pulse
    QuickBooks Desktop EnterpriseShopify
    Considered Both Products
    Intuit
    Chose QuickBooks Desktop Enterprise
    These other options are quite a bit more complex, customizable, and provide lots of options for creating custom integrations. However they all come with an exceptionally high yearly price tag and would require additional programming time to setup those additional features. …
    Incentivized
    Shopify
    No answer on this topic
    Key User Insights
    Would buy again
    88%
    Would buy again
    100 Answers
    98%
    Would buy again
    80 Answers
    Delivers good value for the price
    90%
    Delivers good value for the price
    95 Answers
    97%
    Delivers good value for the price
    77 Answers
    Happy with the feature set
    88%
    Happy with the feature set
    100 Answers
    93%
    Happy with the feature set
    76 Answers
    Lived up to sales and marketing promises
    88%
    Lived up to sales and marketing promises
    69 Answers
    93%
    Lived up to sales and marketing promises
    68 Answers
    Implementation went as expected
    94%
    Implementation went as expected
    80 Answers
    95%
    Implementation went as expected
    69 Answers
    Features
    QuickBooks Desktop EnterpriseShopify
    Payroll Management
    Comparison of Payroll Management features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    8.6
    128 Ratings
    13% above category average
    Shopify
    -
    Ratings
    Pay calculation9.0121 Ratings00 Ratings
    Benefit plan administration7.873 Ratings00 Ratings
    Direct deposit files9.0104 Ratings00 Ratings
    Salary revision and increment management8.495 Ratings00 Ratings
    Reimbursement management8.696 Ratings00 Ratings
    Customization
    Comparison of Customization features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    7.1
    87 Ratings
    6% below category average
    Shopify
    -
    Ratings
    API for custom integration8.269 Ratings00 Ratings
    Plug-ins6.078 Ratings00 Ratings
    Security
    Comparison of Security features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    8.7
    182 Ratings
    6% above category average
    Shopify
    -
    Ratings
    Single sign-on capability9.0142 Ratings00 Ratings
    Role-based user permissions8.3180 Ratings00 Ratings
    Reporting & Analytics
    Comparison of Reporting & Analytics features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    8.0
    201 Ratings
    2% above category average
    Shopify
    -
    Ratings
    Dashboards7.6171 Ratings00 Ratings
    Standard reports8.7199 Ratings00 Ratings
    Custom reports7.8191 Ratings00 Ratings
    General Ledger and Configurable Accounting
    Comparison of General Ledger and Configurable Accounting features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    7.8
    206 Ratings
    2% above category average
    Shopify
    -
    Ratings
    Accounts payable8.7199 Ratings00 Ratings
    Accounts receivable8.1198 Ratings00 Ratings
    Cash management8.7181 Ratings00 Ratings
    Bank reconciliation9.3194 Ratings00 Ratings
    Expense management7.6182 Ratings00 Ratings
    Time tracking6.794 Ratings00 Ratings
    Fixed asset management7.3138 Ratings00 Ratings
    Multi-currency support6.566 Ratings00 Ratings
    Multi-division support7.7110 Ratings00 Ratings
    Regulations compliance7.580 Ratings00 Ratings
    Electronic tax filing7.2103 Ratings00 Ratings
    Self-service portal7.380 Ratings00 Ratings
    Global Financial Support5.738 Ratings00 Ratings
    Primary and Secondary Ledgers8.374 Ratings00 Ratings
    Intercompany Accounting8.296 Ratings00 Ratings
    Localizations8.055 Ratings00 Ratings
    Journals and Reconciliations9.0154 Ratings00 Ratings
    Enterprise Accounting8.3103 Ratings00 Ratings
    Configurable Accounting8.3102 Ratings00 Ratings
    Centralized Rules Framework8.063 Ratings00 Ratings
    Standardized Processes8.2114 Ratings00 Ratings
    Inventory Management
    Comparison of Inventory Management features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    7.4
    120 Ratings
    2% above category average
    Shopify
    -
    Ratings
    Inventory tracking8.1116 Ratings00 Ratings
    Automatic reordering7.961 Ratings00 Ratings
    Location management6.876 Ratings00 Ratings
    Manufacturing module6.660 Ratings00 Ratings
    Order Management
    Comparison of Order Management features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    7.6
    150 Ratings
    3% above category average
    Shopify
    -
    Ratings
    Pricing7.2111 Ratings00 Ratings
    Order entry7.5116 Ratings00 Ratings
    Credit card processing7.1106 Ratings00 Ratings
    Cost of goods sold8.0133 Ratings00 Ratings
    Order Orchestration7.366 Ratings00 Ratings
    End-to-end order visibility8.164 Ratings00 Ratings
    Order exception Resolution8.150 Ratings00 Ratings
    Online Storefront
    Comparison of Online Storefront features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    -
    Ratings
    Shopify
    8.4
    149 Ratings
    7% above category average
    Product catalog & listings00 Ratings8.7149 Ratings
    Product management00 Ratings8.2147 Ratings
    Bulk product upload00 Ratings8.3125 Ratings
    Branding00 Ratings8.6146 Ratings
    Mobile storefront00 Ratings9.1142 Ratings
    Product variations00 Ratings7.9139 Ratings
    Website integration00 Ratings8.7140 Ratings
    Visual customization00 Ratings8.7146 Ratings
    CMS00 Ratings7.6118 Ratings
    Online Shopping Cart
    Comparison of Online Shopping Cart features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    -
    Ratings
    Shopify
    8.5
    141 Ratings
    10% above category average
    Abandoned cart recovery00 Ratings8.2131 Ratings
    Checkout user experience00 Ratings8.8139 Ratings
    Online Payment System
    Comparison of Online Payment System features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    -
    Ratings
    Shopify
    9.4
    143 Ratings
    12% above category average
    eCommerce security00 Ratings9.4143 Ratings
    eCommerce Marketing
    Comparison of eCommerce Marketing features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    -
    Ratings
    Shopify
    8.3
    146 Ratings
    8% above category average
    Promotions & discounts00 Ratings8.4140 Ratings
    Personalized recommendations00 Ratings8.432 Ratings
    SEO00 Ratings8.1135 Ratings
    eCommerce Business Management
    Comparison of eCommerce Business Management features of QuickBooks Desktop Enterprise and Shopify
    Feature
    QuickBooks Desktop Enterprise
    -
    Ratings
    Shopify
    8.1
    147 Ratings
    1% above category average
    Multi-site management00 Ratings6.719 Ratings
    Order processing00 Ratings9.0144 Ratings
    Inventory management00 Ratings7.6143 Ratings
    Shipping00 Ratings8.4135 Ratings
    Custom functionality00 Ratings8.7136 Ratings
    Best Alternatives
    QuickBooks Desktop EnterpriseShopify
    Small Businesses
    QuickBooks Self-Employed (discontinued)
    Score4.3 out of 10
    Ecwid by Lightspeed
    Score10 out of 10
    Medium-sized Companies
    MYOB
    Score8.3 out of 10
    Shopify Plus
    Score8.9 out of 10
    Enterprises
    Microsoft Dynamics GP
    Score5.5 out of 10
    IBM Digital Commerce
    Score9 out of 10
    All AlternativesView all alternativesView all alternatives
    User Ratings
    QuickBooks Desktop EnterpriseShopify
    Likelihood to Recommend
    8.1
    (217 ratings)
    8.4
    (162 ratings)
    Likelihood to Renew
    8.6
    (27 ratings)
    10.0
    (16 ratings)
    Usability
    9.4
    (14 ratings)
    8.3
    (16 ratings)
    Availability
    10.0
    (4 ratings)
    10.0
    (2 ratings)
    Performance
    10.0
    (3 ratings)
    10.0
    (1 ratings)
    Support Rating
    6.0
    (5 ratings)
    10.0
    (3 ratings)
    In-Person Training
    7.0
    (1 ratings)
    -
    (0 ratings)
    Online Training
    9.1
    (3 ratings)
    10.0
    (1 ratings)
    Implementation Rating
    7.5
    (11 ratings)
    10.0
    (2 ratings)
    Configurability
    5.0
    (4 ratings)
    -
    (0 ratings)
    Contract Terms and Pricing Model
    -
    (0 ratings)
    10.0
    (1 ratings)
    CPA Rating
    7.2
    (9 ratings)
    -
    (0 ratings)
    Ease of integration
    9.1
    (2 ratings)
    10.0
    (1 ratings)
    Product Scalability
    10.0
    (3 ratings)
    10.0
    (1 ratings)
    Vendor post-sale
    1.0
    (4 ratings)
    10.0
    (1 ratings)
    Vendor pre-sale
    10.0
    (3 ratings)
    10.0
    (1 ratings)
    User Testimonials
    QuickBooks Desktop EnterpriseShopify
    Likelihood to Recommend
    Intuit
    QuickBooks Enterprise is great for managing our inventory, purchases and income as we receive it. We use it to help budget and plan our monthly purchases, as well as keep each location on track when it comes to their expenses. It's also used for payroll and timekeeping at each store.
    Incentivized
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    Shopify
    Shopify allowed us to handle matrix items and combined listings. Both of which we could not do on our previous platform. There was some customization involved but overall, it did what we needed it to. The one downside was that if we want to change anything we would have to reload the entire set of matrix items manually.
    Incentivized
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    Pros
    Intuit
    • Generally, a mouse is not needed!
    • Updating as each transaction is posted means, in the event of a crash, power failure, whatever; all the posted transactions are securely in the data file and can be pulled up on another computer, if the computer being used crashes.
    • Reporting is generally user friendly, in that one can see the desired results by setting a few parameters for the report.
    Incentivized
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    Shopify
    • It's base security and integration with trusted security partners (such as NoFraud) is a game-changer when it comes to reliability and a "hands off approach" for our IT department. The up-time is also very good.
    • It offers a wide range of verified plugins that are (for the most part) easy to install and use for any specific scenario you're looking for.
    • It's Analytics area in the admin is actually nice and offers a wide variety of reports that you can run.
    Incentivized
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    Cons
    Intuit
    • Wish we had the ability to track gallons. We are a truck stop and need to know how many gallons we buy and sell.
    • Matching up credits in Pay Bills can be challenging, especially if you make a mistake.
    • Wish in some of the reporting that it would automatically total some columns.
    • Downloading from the bank wish it would tell you the last time you downloaded and the dates you put in so you don't download the same information twice.
    Incentivized
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    Shopify
    • I would love it if Shopify built an in house app which helped us post UGCs and social proof from platforms such as Instagram, Youtube etc. more seamlessly on our website. Right now, we are able to do it through third party apps but the look and feel is just okay.
    Incentivized
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    Likelihood to Renew
    Intuit
    While QuickBooks Desktop Enterprise has been an amazing tool for many years, it seems it is getting phased out for QuickBooks Online. Intuit is decreasing the level of support it offers for QuickBooks Desktop in lieu of stronger support for QuickBooks Online. Although the desktop version is robust and helpful, it seems QBO is the way of the future for bookkeeping with QuickBooks.
    Incentivized
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    Shopify
    Nothing we have used in the past or have seen thus far even comes close to offering what we get with Shopify Plus, especially for the price. You cannot even come close to getting what we are getting at the price we pay. We are beyond thrilled and Shopify Plus meets and exceeds all of our needs and expectations. We love it!
    Incentivized
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    Usability
    Intuit
    QuickBooks provides all staff immediate access to the data in whatever form each person wants it. The balancing on entries prevents incorrect data entry on payables/receivables. Reports are easy to customize and save for future use. The records are easy to audit.
    Incentivized
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    Shopify
    It is fairly easy to use Shopify regardless of what task you are attempting to perform. Most things are customizable to a degree without requiring coding ability. I have very limited coding experience and have still been able to navigate my way around changing features of the website that require edits to the code with the use of AI and trial-and-error. This previously wasn't possible with the WooCommerce platform.
    Incentivized
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    Reliability and Availability
    Intuit
    Rating: 7 out of 10
    We rate QuickBooks Desktop Enterprise's availability a 7 out of 10. For the most part, the software is dependable and available when we need it. When hosted on a properly managed local server or through a reputable third-party cloud provider, uptime is generally consistent, and routine day-to-day operations run smoothly.
    However, availability challenges do arise, particularly when accessing QuickBooks remotely or during periods of high system demand. Because it's a desktop-based solution, availability is highly dependent on our internal IT infrastructure. If our network goes down, a server needs maintenance, or if there’s an issue with a remote desktop connection, access to QuickBooks can be temporarily disrupted. These outages aren’t necessarily caused by QuickBooks itself, but they do impact our experience with availability.
    Additionally, we’ve occasionally experienced application errors, especially after updates or when working with large company files. While Intuit support is usually helpful in resolving these issues, they can still lead to frustrating delays—especially during critical periods like month-end closing or grant reporting deadlines.
    Planned maintenance, while infrequent, also affects availability, especially when using a hosted environment. Coordination with IT or hosting providers is sometimes needed to minimize downtime.
    Overall, QuickBooks Desktop Enterprise is a reliable tool, but its dependence on local infrastructure introduces more potential points of failure compared to cloud-native solutions. Enhancements in cloud-based access or hybrid models could significantly improve both accessibility and uptime. That said, with strong internal IT support or a reliable cloud hosting provider, the availability can easily rise to an 8 or 9.
    Incentivized
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    Shopify
    Shopify support is always available when you need them.
    Incentivized
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    Performance
    Intuit
    I rate QuickBooks Desktop Enterprise's performance a 5 out of 10, mainly because while it’s functional for most routine tasks, it can lag significantly when handling complex operations, large data files, or during multi-user sessions. As our organization has grown, we’ve noticed that report generation—especially for customized or multi-dimensional reports—can be slow, sometimes taking several minutes to load or refresh. This impacts productivity, particularly during key financial cycles like audits, monthly closings, or grant reporting.
    Performance degradation is especially noticeable when multiple users are active in the system at the same time. Even with a solid server setup, there’s often a drop in responsiveness when more than a handful of users are generating reports or entering transactions concurrently.
    We’ve also experienced some slowdowns in third-party integrations, particularly when syncing with Vena Solutions or exporting data for use in external tools. While the integrations are valuable, they occasionally stall or require workarounds, adding friction to our workflows.
    In short, QuickBooks Desktop Enterprise delivers the basics well, but its performance limitations become more apparent in high-volume or complex use cases. It would benefit from better optimization for large datasets and faster processing for advanced reporting. Upgrades in system architecture—such as deeper support for cloud hosting or more efficient data handling—could significantly improve the user experience and move this rating closer to an 8.
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    Shopify
    Shopify website speed is quite impressive. Even if we integrate couple apps, it does not hamper the site speed.
    Incentivized
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    Support Rating
    Intuit
    It takes a long time to get through to customer support. And sometimes you have to explain the situation multiple times before the rep actually understands the issue, but that's usually because the issue is complex and out of the ordinary. However, the rep is always patient, and will take as much time and effort as necessary to resolve whatever issue you're having. It's nice that they can "take over" your computer rather than having to talk you through the solution over the phone.
    Incentivized
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    Shopify
    In terms of support I give Shopify a 9 out of 10 because they're always very friendly and thorough, and they personally can't solve my problem for me they always point me in the proper direction with the proper information I need to move forward
    Incentivized
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    In-Person Training
    Intuit
    It is a very easy system to learn, so with the help it was even easier. QB is a good solid system, but it lacks some of the complexity other systems have. with QB you need to get additional modules to get the same functionality that other systems offer standard
    Incentivized
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    Shopify
    No answers on this topic
    Online Training
    Intuit
    easy to learn system, specially with some kind of support. Just like with any other system, things get lot easier if you have guidance to lead you in your search for answers. having said that, QB is very easy to use and very easy to teach. you wont spend much time memorizing where to click.
    Incentivized
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    Shopify
    Shopify offered us several trainings to setup a Shopify store, how to build a brand, SEO, product photography etc. All this content have been super helpful in our journey.
    Incentivized
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    Implementation Rating
    Intuit
    If you're loading QuickBooks Enterprise Solutions onto a computer that you're going to directly log into, you should be able to do it yourself. If you are going to connect to a server through a network or remote connection, you should probably have a professional IT person set it up for you.
    Incentivized
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    Shopify
    Just start now and make the switch, the sooner the better. You will love it and it is really a simple process
    Incentivized
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    Alternatives Considered
    Intuit
    We have selected this product as it is affordoable in terms of pricing and features too. Our clients is geeting lots of benefits by using this product. By using QuickBooks desktop client also manage the information realted to financials and also get the clear picture for the future by using the accounting information from this product.
    Incentivized
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    Shopify
    Big Commerce and SAP Hybris are two other platforms we've investigated and Shopify is by far easiest to use and customize. While it doesn't do everything out of the box, the apps do fill in many gaps. The cost however, is probably the biggest selling point against these other two options.
    Incentivized
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    Scalability
    Intuit
    I would rate QuickBooks Desktop Enterprise a 7 out of 10 for overall scalability. The product offers solid scalability features, particularly for small to mid-sized organizations like ours that are growing and need reliable multi-user access, enhanced data capacity, and cross-departmental functionality. It handles increasing transaction volumes and user growth quite well, especially with its support for up to 40 users and the ability to manage large lists (customers, vendors, accounts, etc.)—a significant improvement over QuickBooks Pro or Premier.
    Its role-based permissions system also allows us to assign tailored access by department or user level, which is essential for maintaining control and security across teams like finance, HR, and program management. Additionally, features like advanced reporting, inventory management, and class tracking have helped us better manage multiple programs or sites within one system.
    That said, the scalability still has some limits. For example, deploying the software across multiple physical locations or for remote teams requires additional IT infrastructure—such as hosting it on a third-party cloud server or setting up a VPN—which introduces cost and complexity. Also, while QuickBooks Desktop Enterprise can technically handle a high volume of data, performance can decline as the file size grows over time unless regular maintenance and optimization are done.
    In summary, QuickBooks Desktop Enterprise scales well within its designed range, particularly for growing nonprofits and NGOs. However, organizations with distributed teams or very large, complex operations may eventually find the system’s desktop-based architecture less agile compared to cloud-native ERP platforms. With enhancements to cloud integration and remote accessibility, this rating could easily increase.
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    Shopify
    Shopify has basic to high-end plans. The plans grow with the brand`s growth and I love that about Shopify.
    Incentivized
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    Return on Investment
    Intuit
    • Good value for the price. The initial setup was quick and easy.
    • When properly set up and processes are followed it's decent at managing inventory which is something we had problems with. Have to have a dedicated employee to builds.
    • Rolling up costs in multi-level BOM's is a project each time we have to review costs, it's very time consuming to manually update all assemblies.
    Incentivized
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    Shopify
    • It got the store up quickly so the client could start selling. She was previously selling products on Etsy and Facebook and wanted to consolidate everything onto one website, so the main thing Shopify solved was to reduce the store owner's time in managing all her products on multiple sites. Also, we had previously built a website on Wix with all the custom functionality and branding she needed - a truly great, high-end website - but it performed so slowly that it was unusable. So the speed at which Shopify can be set up and then works on the page is appreciable.
    • The website was manageable by the client - she could figure the system out herself after a while so she saved money on costs for hiring developers. She did have to hire developers to customize some of the plug-ins but costs are all relative; it wasn't a high investment compared to building a full e-commerce website. With the complexity and size of her product base and the functionality and branding she wanted to have in a website, and the potential of her business, she would have needed to invest well over $10,000 to get to where she really needs to be. In the end she kept the budget under $5000.00.
    • Costs kept climbing with plug-ins having to be added with everything. My client became more involved in building the website and began to try multiple plugins, and she did not have the skill base to evaluate the plugins functionalities so she chose plugins that did not do everything she needed, and then ended up paying the plugin developers to customize the plugins. So on one hand, it's pretty amazing to be able to bring up an e-commerce website as quickly as a week or so, but on the other hand if you need anything customized or deeper functionality in regards to product searching and filtering on the web page, and management on the backend, it quickly goes beyond the skills of the average person to manage, and above their expected budget as well. In the end my client really did not get anything close to the functionality for the website we had originally envisioned.
    • Shopify was the easiest way we could find to bring the client's products to a global market. We evaluated several other platforms and the functionality simple did not seem to be adequate, so Shopify seemed like the only solution that could do enough of what we needed and still stay within this client's budget. Really the problem in this project was not platform per se but that the budget wasn't large enough. Shopify managed to provide a solution for an ecommerce store with thousands of products on a tiny budget, so in the sense of pure functionality it provided the best value of all the platforms we evaluated. The solution still isn't big enough for this client's business though so, without having insights into this client's post-build sales results, my guess is that because her new website did not make her products easier to sort through, and she likely didn't have much more budget left to invest in SEO and other marketing of the website, her sales probably didn't increase substantially as a result of having built the website. So I think this project all in all did not likely have a high ROI.
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