QuickBooks Desktop Enterprise vs. Wave Accounting

Overview
ProductRatingMost Used ByProduct SummaryStarting Price
QuickBooks Desktop Enterprise
Score 8.0 out of 10
N/A
QuickBooks Desktop Enterprise is a widely-used accounting package designed for small to mid-sized businesses. It is the top of the QuickBooks line. Pricing starts at $3,000 for five users, and goes up depending on the number of additional users. They also offer an Advanced Inventory module for $999 / year.
$1,703
per year per user
Wave Accounting
Score 7.5 out of 10
N/A
Wave Accounting is a free, cloud-based accounting platform exclusively for small businesses. It supports double-entry bookkeeping and permits unlimited user access, invoicing, and expense management. Wave Accounting integrates with Wave's invoicing, receipt scanning, payment processing and payroll apps.
$16
per month
Pricing
QuickBooks Desktop EnterpriseWave Accounting
Editions & Modules
Diamond
$447
per month per user
Diamond with Remote Access
$513
per month per user
Gold
2,210.00
per year per user
Platinum
2,717.00
per year per user
Gold with Remote Access
3,000.00
per year per user
Platinum with Remote Access
3,504.00
per year per user
Starter
$0
Pro
$16
per month
Pro - billed annually
$170
per year
Offerings
Pricing Offerings
QuickBooks Desktop EnterpriseWave Accounting
Free Trial
NoNo
Free/Freemium Version
NoYes
Premium Consulting/Integration Services
NoNo
Entry-level Setup FeeNo setup feeNo setup fee
Additional Details
More Pricing Information
Community Pulse
QuickBooks Desktop EnterpriseWave Accounting
Considered Both Products
QuickBooks Desktop Enterprise
Wave Accounting
Chose Wave Accounting
Wave's price point was in line with what my company needed to manage basic accounting (payable and receivable accounts). It made it easy for me to issue monthly invoices to clients and track when invoices were paid. The software makes these tasks easy to manage and inputting …
Chose Wave Accounting
Circling back to the "free" thing again. For a small business, I am getting for free what QuickBooks Online charges no less than $40/month. Moving away from "free," these other solutions I listed above do more, and these would be the right solutions for the right needs. All of …
Chose Wave Accounting
Unfortunately we did not do our due diligence before selecting Wave. We came across them through our payroll provider (ADP) and assumed that it was good since we have had a great experience with ADP. In the future I would strongly recommend others to not just read online …
Chose Wave Accounting
Day and night. I found QuickBooks Legacy for Enterprise clunky and outdated and the user experiences are without compare.
Features
QuickBooks Desktop EnterpriseWave Accounting
Payroll Management
Comparison of Payroll Management features of Product A and Product B
QuickBooks Desktop Enterprise
8.5
125 Ratings
12% above category average
Wave Accounting
6.2
24 Ratings
20% below category average
Pay calculation9.2118 Ratings7.123 Ratings
Benefit plan administration7.871 Ratings7.54 Ratings
Direct deposit files8.9102 Ratings1.220 Ratings
Salary revision and increment management8.193 Ratings7.712 Ratings
Reimbursement management8.294 Ratings7.48 Ratings
Customization
Comparison of Customization features of Product A and Product B
QuickBooks Desktop Enterprise
7.4
85 Ratings
4% below category average
Wave Accounting
8.5
13 Ratings
10% above category average
API for custom integration7.768 Ratings9.99 Ratings
Plug-ins7.177 Ratings7.011 Ratings
Security
Comparison of Security features of Product A and Product B
QuickBooks Desktop Enterprise
8.7
178 Ratings
6% above category average
Wave Accounting
6.5
45 Ratings
23% below category average
Single sign-on capability9.1139 Ratings6.532 Ratings
Role-based user permissions8.4176 Ratings6.536 Ratings
Reporting & Analytics
Comparison of Reporting & Analytics features of Product A and Product B
QuickBooks Desktop Enterprise
8.2
196 Ratings
5% above category average
Wave Accounting
8.1
73 Ratings
3% above category average
Dashboards8.2167 Ratings7.971 Ratings
Standard reports8.8194 Ratings8.970 Ratings
Custom reports7.7187 Ratings7.437 Ratings
General Ledger and Configurable Accounting
Comparison of General Ledger and Configurable Accounting features of Product A and Product B
QuickBooks Desktop Enterprise
7.9
200 Ratings
4% above category average
Wave Accounting
7.2
76 Ratings
6% below category average
Accounts payable8.6193 Ratings8.459 Ratings
Accounts receivable8.3193 Ratings8.470 Ratings
Cash management8.8176 Ratings9.262 Ratings
Bank reconciliation9.4189 Ratings8.565 Ratings
Expense management8.0177 Ratings8.764 Ratings
Time tracking6.692 Ratings9.811 Ratings
Fixed asset management7.2135 Ratings9.812 Ratings
Multi-currency support6.865 Ratings10.019 Ratings
Multi-division support7.4107 Ratings7.19 Ratings
Regulations compliance7.477 Ratings5.016 Ratings
Electronic tax filing7.3100 Ratings5.914 Ratings
Self-service portal7.079 Ratings8.040 Ratings
Global Financial Support6.138 Ratings9.02 Ratings
Primary and Secondary Ledgers8.472 Ratings9.05 Ratings
Intercompany Accounting7.795 Ratings4.05 Ratings
Localizations8.354 Ratings5.23 Ratings
Journals and Reconciliations9.3149 Ratings8.530 Ratings
Enterprise Accounting8.6100 Ratings4.07 Ratings
Configurable Accounting8.598 Ratings5.017 Ratings
Centralized Rules Framework8.461 Ratings1.03 Ratings
Standardized Processes8.4111 Ratings7.019 Ratings
Inventory Management
Comparison of Inventory Management features of Product A and Product B
QuickBooks Desktop Enterprise
7.6
117 Ratings
1% above category average
Wave Accounting
8.1
11 Ratings
7% above category average
Inventory tracking8.0113 Ratings5.68 Ratings
Automatic reordering7.760 Ratings9.95 Ratings
Location management7.675 Ratings8.12 Ratings
Manufacturing module7.259 Ratings9.01 Ratings
Order Management
Comparison of Order Management features of Product A and Product B
QuickBooks Desktop Enterprise
8.1
146 Ratings
6% above category average
Wave Accounting
7.6
53 Ratings
0% below category average
Pricing8.1108 Ratings9.926 Ratings
Order entry8.4114 Ratings10.018 Ratings
Credit card processing7.7103 Ratings2.345 Ratings
Cost of goods sold8.7131 Ratings10.034 Ratings
Order Orchestration7.864 Ratings5.85 Ratings
End-to-end order visibility8.163 Ratings8.24 Ratings
Order exception Resolution8.149 Ratings7.02 Ratings
Best Alternatives
QuickBooks Desktop EnterpriseWave Accounting
Small Businesses
QuickBooks Self-Employed (discontinued)
QuickBooks Self-Employed (discontinued)
Score 7.2 out of 10
QuickBooks Self-Employed (discontinued)
QuickBooks Self-Employed (discontinued)
Score 7.2 out of 10
Medium-sized Companies
Zoho Books
Zoho Books
Score 9.1 out of 10
Zoho Books
Zoho Books
Score 9.1 out of 10
Enterprises
SAP S/4HANA Cloud
SAP S/4HANA Cloud
Score 8.5 out of 10
SAP S/4HANA Cloud
SAP S/4HANA Cloud
Score 8.5 out of 10
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User Ratings
QuickBooks Desktop EnterpriseWave Accounting
Likelihood to Recommend
8.4
(208 ratings)
7.5
(82 ratings)
Likelihood to Renew
8.5
(26 ratings)
7.8
(3 ratings)
Usability
9.9
(13 ratings)
8.8
(17 ratings)
Availability
10.0
(4 ratings)
6.7
(4 ratings)
Performance
10.0
(3 ratings)
2.9
(2 ratings)
Support Rating
6.0
(5 ratings)
2.1
(12 ratings)
In-Person Training
7.0
(1 ratings)
-
(0 ratings)
Online Training
9.1
(3 ratings)
4.7
(3 ratings)
Implementation Rating
9.5
(10 ratings)
-
(0 ratings)
Configurability
5.2
(4 ratings)
-
(0 ratings)
Ease of integration
9.1
(2 ratings)
-
(0 ratings)
Product Scalability
10.0
(3 ratings)
3.0
(2 ratings)
Vendor post-sale
1.3
(4 ratings)
-
(0 ratings)
Vendor pre-sale
10.0
(3 ratings)
-
(0 ratings)
User Testimonials
QuickBooks Desktop EnterpriseWave Accounting
Likelihood to Recommend
Intuit
QuickBooks Enterprise is great for managing our inventory, purchases and income as we receive it. We use it to help budget and plan our monthly purchases, as well as keep each location on track when it comes to their expenses. It's also used for payroll and timekeeping at each store.
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Wave
Wave Accounting was used for a small practice without a lot of the accounting considerations a large company would have. For the price, you really can't beat what Wave offers out of the box. All of the basic tools for things like invoicing and expenses are all easy to use. End of year accounting is easy with exports of data.
Read full review
Pros
Intuit
  • Generally, a mouse is not needed!
  • Updating as each transaction is posted means, in the event of a crash, power failure, whatever; all the posted transactions are securely in the data file and can be pulled up on another computer, if the computer being used crashes.
  • Reporting is generally user friendly, in that one can see the desired results by setting a few parameters for the report.
Read full review
Wave
  • Reconciliation is very difficult with multiple Wave transactions that need to be deleted or merged before it can be matched to a bank transaction.
  • Payroll worked fine for us but took several days to get it set up. We have switched to another bookkeeping system and another payroll system. Canceling with Wave took several days and they charge $6 for something even though the month was paid for in advance.
  • Credit card processing is nice and worked fine for us.
Read full review
Cons
Intuit
  • Wish we had the ability to track gallons. We are a truck stop and need to know how many gallons we buy and sell.
  • Matching up credits in Pay Bills can be challenging, especially if you make a mistake.
  • Wish in some of the reporting that it would automatically total some columns.
  • Downloading from the bank wish it would tell you the last time you downloaded and the dates you put in so you don't download the same information twice.
Read full review
Wave
  • I know that credit card processing is a way for Wave to make money, but I really wish they offered ACH payment on Invoices.
  • I do cash-based accounting, which means I have to make little journal entries at the start and end of each year to get my books to balance because Wave wants to do everything differently. This should just be a setting to flip, whether you want cash-based or accrual-based.
  • They use Yodlee for bank connection, which doesn't play nice with 2FA. Pretty much every time I log in I have to re-enter credentials, get a code sent to me, reauthenticate, and know that I'm going to have to do it again next week. Not really on Wave, but wish they could get it together nonetheless.
Read full review
Likelihood to Renew
Intuit
While QuickBooks Desktop Enterprise has been an amazing tool for many years, it seems it is getting phased out for QuickBooks Online. Intuit is decreasing the level of support it offers for QuickBooks Desktop in lieu of stronger support for QuickBooks Online. Although the desktop version is robust and helpful, it seems QBO is the way of the future for bookkeeping with QuickBooks.
Read full review
Wave
Easy to use for clients with no accounting background and the price is right.
Read full review
Usability
Intuit
QuickBooks provides all staff immediate access to the data in whatever form each person wants it. The balancing on entries prevents incorrect data entry on payables/receivables. Reports are easy to customize and save for future use. The records are easy to audit.
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Wave
I am a professional bookkeeper and I have no problems using Wave and all of it's features. I can see that certain individuals who have no accounting knowledge might struggle with a few different features and entries, but that is why Wave has an emphasis in connecting users to Wave Pro's who will walk them through things
Read full review
Reliability and Availability
Intuit
Rating: 7 out of 10
We rate QuickBooks Desktop Enterprise's availability a 7 out of 10. For the most part, the software is dependable and available when we need it. When hosted on a properly managed local server or through a reputable third-party cloud provider, uptime is generally consistent, and routine day-to-day operations run smoothly.
However, availability challenges do arise, particularly when accessing QuickBooks remotely or during periods of high system demand. Because it's a desktop-based solution, availability is highly dependent on our internal IT infrastructure. If our network goes down, a server needs maintenance, or if there’s an issue with a remote desktop connection, access to QuickBooks can be temporarily disrupted. These outages aren’t necessarily caused by QuickBooks itself, but they do impact our experience with availability.
Additionally, we’ve occasionally experienced application errors, especially after updates or when working with large company files. While Intuit support is usually helpful in resolving these issues, they can still lead to frustrating delays—especially during critical periods like month-end closing or grant reporting deadlines.
Planned maintenance, while infrequent, also affects availability, especially when using a hosted environment. Coordination with IT or hosting providers is sometimes needed to minimize downtime.
Overall, QuickBooks Desktop Enterprise is a reliable tool, but its dependence on local infrastructure introduces more potential points of failure compared to cloud-native solutions. Enhancements in cloud-based access or hybrid models could significantly improve both accessibility and uptime. That said, with strong internal IT support or a reliable cloud hosting provider, the availability can easily rise to an 8 or 9.
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Wave
WAVE is always available when we need it ! Peter
Read full review
Performance
Intuit
I rate QuickBooks Desktop Enterprise's performance a 5 out of 10, mainly because while it’s functional for most routine tasks, it can lag significantly when handling complex operations, large data files, or during multi-user sessions. As our organization has grown, we’ve noticed that report generation—especially for customized or multi-dimensional reports—can be slow, sometimes taking several minutes to load or refresh. This impacts productivity, particularly during key financial cycles like audits, monthly closings, or grant reporting.
Performance degradation is especially noticeable when multiple users are active in the system at the same time. Even with a solid server setup, there’s often a drop in responsiveness when more than a handful of users are generating reports or entering transactions concurrently.
We’ve also experienced some slowdowns in third-party integrations, particularly when syncing with Vena Solutions or exporting data for use in external tools. While the integrations are valuable, they occasionally stall or require workarounds, adding friction to our workflows.
In short, QuickBooks Desktop Enterprise delivers the basics well, but its performance limitations become more apparent in high-volume or complex use cases. It would benefit from better optimization for large datasets and faster processing for advanced reporting. Upgrades in system architecture—such as deeper support for cloud hosting or more efficient data handling—could significantly improve the user experience and move this rating closer to an 8.
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Wave
Wave does tend to slow down when filtering your transactions screen especially by date. This is more of an issue when trying to trouble shoot certain transactions or clean-up a set of books.
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Support Rating
Intuit
It takes a long time to get through to customer support. And sometimes you have to explain the situation multiple times before the rep actually understands the issue, but that's usually because the issue is complex and out of the ordinary. However, the rep is always patient, and will take as much time and effort as necessary to resolve whatever issue you're having. It's nice that they can "take over" your computer rather than having to talk you through the solution over the phone.
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Wave
I never had to call Wave Support as we barely experienced any support-related problems on our side. However, I do know a few people that complained about Wave support. It would be nice as well, though if they could have more in your face tutorials for new users or how-to videos should we struggle to do something
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In-Person Training
Intuit
It is a very easy system to learn, so with the help it was even easier. QB is a good solid system, but it lacks some of the complexity other systems have. with QB you need to get additional modules to get the same functionality that other systems offer standard
Read full review
Wave
No answers on this topic
Online Training
Intuit
easy to learn system, specially with some kind of support. Just like with any other system, things get lot easier if you have guidance to lead you in your search for answers. having said that, QB is very easy to use and very easy to teach. you wont spend much time memorizing where to click.
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Wave
easy to use and east to train on ! Our WAVE clients enjoy the ease of use
Read full review
Implementation Rating
Intuit
If you're loading QuickBooks Enterprise Solutions onto a computer that you're going to directly log into, you should be able to do it yourself. If you are going to connect to a server through a network or remote connection, you should probably have a professional IT person set it up for you.
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Wave
No answers on this topic
Alternatives Considered
Intuit
We have selected this product as it is affordoable in terms of pricing and features too. Our clients is geeting lots of benefits by using this product. By using QuickBooks desktop client also manage the information realted to financials and also get the clear picture for the future by using the accounting information from this product.
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Wave
Wave is FREE for most functions. Payment processing costs no matter where you go (as does payroll or taxes). Wave rises above tools like QuickBooks Online because they know that for our small firm, being nimble is the name of the game. We don't need exhaustive reporting and management like QB offers and we certainly don't want to pay for it
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Scalability
Intuit
I would rate QuickBooks Desktop Enterprise a 7 out of 10 for overall scalability. The product offers solid scalability features, particularly for small to mid-sized organizations like ours that are growing and need reliable multi-user access, enhanced data capacity, and cross-departmental functionality. It handles increasing transaction volumes and user growth quite well, especially with its support for up to 40 users and the ability to manage large lists (customers, vendors, accounts, etc.)—a significant improvement over QuickBooks Pro or Premier.
Its role-based permissions system also allows us to assign tailored access by department or user level, which is essential for maintaining control and security across teams like finance, HR, and program management. Additionally, features like advanced reporting, inventory management, and class tracking have helped us better manage multiple programs or sites within one system.
That said, the scalability still has some limits. For example, deploying the software across multiple physical locations or for remote teams requires additional IT infrastructure—such as hosting it on a third-party cloud server or setting up a VPN—which introduces cost and complexity. Also, while QuickBooks Desktop Enterprise can technically handle a high volume of data, performance can decline as the file size grows over time unless regular maintenance and optimization are done.
In summary, QuickBooks Desktop Enterprise scales well within its designed range, particularly for growing nonprofits and NGOs. However, organizations with distributed teams or very large, complex operations may eventually find the system’s desktop-based architecture less agile compared to cloud-native ERP platforms. With enhancements to cloud integration and remote accessibility, this rating could easily increase.
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Wave
Once they out grow what is ability to move up to a more robust system?
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Return on Investment
Intuit
  • Good value for the price. The initial setup was quick and easy.
  • When properly set up and processes are followed it's decent at managing inventory which is something we had problems with. Have to have a dedicated employee to builds.
  • Rolling up costs in multi-level BOM's is a project each time we have to review costs, it's very time consuming to manually update all assemblies.
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Wave
  • Wave has been ROI positive for our company. With not having to pay for the service we can use our money for growing our business.
  • The fees on credit card transactions for invoices are reasonable especially as we don't pay a monthly subscription.
  • The invoicing feature has made our lives easier for us and our customers. The invoicing piece and AR tracking has been ROI positive as well.
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